Reduced Order Modeling for Real-Time Stent Deformation Simulations of Transcatheter Aortic Valve Prostheses.

Computational modeling can be a critical tool to predict deployment behavior for transcatheter aortic valve replacement (TAVR) in patients with aortic stenosis. However, due to the mechanical complexity of the aortic valve and the multiphysics nature of the problem, described by partial differential equations (PDEs), traditional finite element (FE) modeling of TAVR deployment is computationally expensive. In this preliminary study, a PDEs-based reduced order modeling (ROM) framework is introduced for rapidly simulating structural deformation of the Medtronic Evolut R valve stent frame. Using fifteen probing points from an Evolut model with parametrized loads enforced, 105 FE simulations were performed in the so-called offline phase, creating a snapshot library. The library was used in the online phase of the ROM for a new set of applied loads via the proper orthogonal decomposition-Galerkin (POD-Galerkin) approach. Simulations of small radial deformations of the Evolut stent frame were performed and compared to full order model (FOM) solutions. Linear elastic and hyperelastic constitutive models in steady and unsteady regimes were implemented within the ROM. Since the original POD-Galerkin method is formulated for linear problems, specific methods for the nonlinear terms in the hyperelastic case were employed, namely, the Discrete Empirical Interpolation Method. The ROM solutions were in strong agreement with the FOM in all numerical experiments, with a speed-up of at least 92% in CPU Time. This framework serves as a first step toward real-time predictive models for TAVR deployment simulations.

Life history and biogeography of the enigmatic mantid Nilomantisfloweri (Mantodea, Nanomantidae).

The biology and distribution patterns of the Sahelian mantid species Nilomantisfloweri are still insufficiently known. For the first time, records are confirmed of this species from Iran and the distribution map of its native range is updated. Records are compiled from the Sahel zone of North Africa, the Arabian Peninsula, and Iran. Detailed information on its biology, oothecal characteristics, male genitalia variation, and intraspecific molecular diversity in the mitochondrial gene cytochrome c oxidase are provided, and ecological niche modelling was used to gain insight into the overall species distribution and understand its climatic niche limits. Genetic analysis revealed only one haplotype shared between Iran and Oman. The Iranian populations likely represent two distinct clusters, both more related to the diverse Oman haplotypes than to each other. Based on new data, N.floweri appears to be mostly associated with coastal areas in southwestern Asia, with the vast majority of records found along the Red Sea, Persian Gulf, and Oman Gulf coasts. This distribution contrasts markedly with N.floweri records in the Sahel, where most collections have been reported in the transitional zone between the southern Sahara and arid thorn savannah, far off the coast. This study contributes to a comprehensive understanding of this still enigmatic mantid species.

Integrative taxonomic revision of the genera Nesticella and Howaia in Japan with the description of five new species (Araneae, Nesticidae, Nesticellini).

The Japanese species of the genera Nesticella Lehtinen & Saaristo, 1980 and Howaia Lehtinen & Saaristo, 1980 (Araneae, Nesticidae, Nesticellini) are revised using an integrative taxonomic approach. Their morphology, phylogenetic position within the genera, assignment to species groups, and distribution in mainland Japan and the Ryukyu islands are discussed herein. A phylogenetic and species delimitation analysis was conducted to confirm the boundaries between the putative species that were initially discriminated based on external and genital morphology. As a result of the present study, six species of Nesticella and three species of Howaia are proposed for the fauna of Japan based on the combined results of morphology and molecular analyses. Male and female of the previously known species H.mogera (Yaginuma, 1972), N.brevipes (Yaginuma, 1970), and N.okinawaensis (Yaginuma, 1979) are redescribed and illustrated using type specimens or specimens collected at the type locality. Nesticellaterrestris (Yaginuma, 1970) is resurrected as a valid species and distinguished from the closely related N.brevipes based on morphological and molecular evidence. The male of N.terrestris is described for the first time. We herein describe three new species of Nesticella and two new species of Howaia from different islands in the Ryukyu Archipelago, southwest Japan: N.insulanasp. nov. (♂, ♀) from Yonaguni-jima Island, N.occultasp. nov. (♀) from Ishigaki-jima Island, N.silvicolasp. nov. (♂, ♀) from Yakushima Island, H.albasp. nov. (♂, ♀) from Miyako-jima Island and H.subterraneasp. nov. (♀) from Okinoerabu-jima Island. Nesticellaoccultasp. nov., H.albasp. nov. and H.subterraneasp. nov. dwell exclusively in caves and show extensive morphological adaptation to subterranean life.

Baiyuerius gen. nov., a new genus of Coelotinae (Araneae, Agelenidae) spiders from China and Vietnam.

Baiyueriusgen. nov., a new genus of the subfamily Coelotinae F. O. Pickard-Cambridge, 1893 is described, including five new species: B.daxisp. nov. (♀), B.pindongsp. nov. (♂), B.tamdaosp. nov. (♀), B.zhupingsp. nov. (♂) and B.zuojiangsp. nov. (♂♀), from southern China and northern Vietnam. Our molecular phylogenetic analyses support Baiyuerius gen. nov. as monophyletic and as a sister group of the newly established genus Yunguirius Li, Zhao & Li, 2023.

Marine-montane transitions coupled with gill and genetic convergence in extant crustacean.

Marine-terrestrial transition represents an important aspect of organismal evolution that requires numerous morphological and genetic innovations and has been hypothesized to be caused by geological changes. We used talitrid crustaceans with marine-coastal-montane extant species at a global scale to investigate the marine origination and terrestrial adaptation. Using genomic data, we demonstrated that marine ancestors repeatedly colonized montane terrestrial habitats during the Oligocene to Miocene. Biological transitions were well correlated with plate collisions or volcanic island formation, and top-down cladogenesis was observed on the basis of a positive relationship between ancestral habitat elevation and divergence time for montane lineages. We detected convergent variations of convoluted gills and convergent evolution of SMC3 associated with montane transitions. Moreover, using CRISPR-Cas9 mutagenesis, we proposed that SMC3 potentially regulates the development of exites, such as talitrid gills. Our results provide a living model for understanding biological innovations and related genetic regulatory mechanisms associated with marine-terrestrial transitions.

Projection Based Semi-Implicit Partitioned Reduced Basis Method for Fluid-Structure Interaction Problems.

In this manuscript a POD-Galerkin based Reduced Order Model for unsteady Fluid-Structure Interaction problems is presented. The model is based on a partitioned algorithm, with semi-implicit treatment of the coupling conditions. A Chorin-Temam projection scheme is applied to the incompressible Navier-Stokes problem, and a Robin coupling condition is used for the coupling between the fluid and the solid. The coupled problem is based on an Arbitrary Lagrangian Eulerian formulation, and the Proper Orthogonal Decomposition procedure is used for the generation of the reduced basis. We extend existing works on a segregated Reduced Order Model for Fluid-Structure Interaction to unsteady problems that couple an incompressible, Newtonian fluid with a linear elastic solid, in two spatial dimensions. We consider three test cases to assess the overall capabilities of the method: an unsteady, non-parametrized problem, a problem that presents a geometrical parametrization of the solid domain, and finally, a problem where a parametrization of the solid's shear modulus is taken into account.

A comprehensive update on the morphology and distribution of the invasive scaffold-web spider Eidmannella pallida (Araneae, Nesticidae) with a focus on new records from Italy.

Updated non-native distributional data of the invasive spider Eidmannella pallida (Emerton, 1875), Nesticidae, are herein summarized together with the morphological characters of the species. We report all the known localities from the literature. Furthermore, we present and discuss recent findings for the Italian peninsula. In particular, the species has been consistently found in vineyards and annual crop fields in North Italy and in olive groves in South Italy. We include a redescription of the species, and detailed illustrations of the diagnostic characters of both males and females, based on stereomicroscope and SEM images. The spreading potential of the species and its possible impacts on local communities are discussed. Our data suggest that E. pallida has high invasiveness potential and several new findings in non-native areas were recorded in the last years. We found that E. pallida can establish permanent populations in crop-dominated landscapes and has a tendency to exploit vulnerable ecosystems such as the subterranean environment. We thus recommend new and more comprehensive studies on this species to investigate in deeper detail its phylogeny, ecology, and micro-habitat preferences. A high effort should be placed to assess the potential negative effects of E. pallida on the endemic fauna in invaded areas, especially in caves.

Enhancing high-fidelity nonlinear solver with reduced order model.

We propose the use of reduced order modeling (ROM) to reduce the computational cost and improve the convergence rate of nonlinear solvers of full order models (FOM) for solving partial differential equations. In this study, a novel ROM-assisted approach is developed to improve the computational efficiency of FOM nonlinear solvers by using ROM's prediction as an initial guess. We hypothesize that the nonlinear solver will take fewer steps to the converged solutions with an initial guess that is closer to the real solutions. To evaluate our approach, four physical problems with varying degrees of nonlinearity in flow and mechanics have been tested: Richards' equation of water flow in heterogeneous porous media, a contact problem in a hyperelastic material, two-phase flow in layered porous media, and fracture propagation in a homogeneous material. Overall, our approach maintains the FOM's accuracy while speeding up nonlinear solver by 18-73% (through suitable ROM-assisted FOMs). More importantly, the proximity of ROM's prediction to the solution space leads to the improved convergence of FOMs that would have otherwise diverged with default initial guesses. We demonstrate that the ROM's accuracy can impact the computational efficiency with more accurate ROM solutions, resulting in a better cost reduction. We also illustrate that this approach could be used in many FOM discretizations (e.g., finite volume, finite element, or a combination of those). Since our ROMs are data-driven and non-intrusive, the proposed procedure can easily lend itself to any nonlinear physics-based problem.

Reduced order modeling for flow and transport problems with Barlow Twins self-supervised learning.

We propose a unified data-driven reduced order model (ROM) that bridges the performance gap between linear and nonlinear manifold approaches. Deep learning ROM (DL-ROM) using deep-convolutional autoencoders (DC-AE) has been shown to capture nonlinear solution manifolds but fails to perform adequately when linear subspace approaches such as proper orthogonal decomposition (POD) would be optimal. Besides, most DL-ROM models rely on convolutional layers, which might limit its application to only a structured mesh. The proposed framework in this study relies on the combination of an autoencoder (AE) and Barlow Twins (BT) self-supervised learning, where BT maximizes the information content of the embedding with the latent space through a joint embedding architecture. Through a series of benchmark problems of natural convection in porous media, BT-AE performs better than the previous DL-ROM framework by providing comparable results to POD-based approaches for problems where the solution lies within a linear subspace as well as DL-ROM autoencoder-based techniques where the solution lies on a nonlinear manifold; consequently, bridges the gap between linear and nonlinear reduced manifolds. We illustrate that a proficient construction of the latent space is key to achieving these results, enabling us to map these latent spaces using regression models. The proposed framework achieves a relative error of 2% on average and 12% in the worst-case scenario (i.e., the training data is small, but the parameter space is large.). We also show that our framework provides a speed-up of [Formula: see text] times, in the best case, and [Formula: see text] times on average compared to a finite element solver. Furthermore, this BT-AE framework can operate on unstructured meshes, which provides flexibility in its application to standard numerical solvers, on-site measurements, experimental data, or a combination of these sources.

Non-intrusive PODI-ROM for patient-specific aortic blood flow in presence of a LVAD device.

Left ventricular assist devices (LVADs) are used to provide haemodynamic support to patients with critical cardiac failure. Severe complications can occur because of the modifications of the blood flow in the aortic region. In this work, the effect of a continuous flow LVAD device on the aortic flow is investigated by means of a non-intrusive reduced order model (ROM) built using the proper orthogonal decomposition with interpolation (PODI) method based on radial basis functions (RBF). The full order model (FOM) is represented by the incompressible Navier-Stokes equations discretized by using a Finite Volume (FV) technique, coupled with three-element Windkessel models to enforce outlet boundary conditions in a multi-scale approach. A patient-specific framework is proposed: a personalized geometry reconstructed from Computed Tomography (CT) images is used and the individualization of the coefficients of the three-element Windkessel models is based on experimental data provided by the Right Heart Catheterization (RHC) and Echocardiography (ECHO) tests. At FOM level, we also consider the pre-surgery configuration in order to further validate the predictive capabilities of the model in several contexts. The ROM has been tested by considering a parametric setting with respect to the LVAD flow, which is a crucial parameter of the problem. We consider a parameter range that covers typical clinical values. The accuracy of the ROM is assessed against results obtained with the FOM both for primal, velocity and pressure, and derived quantities, wall shear stress (WSS). Finally, we briefly discuss the efficiency of our ROM approach.

Consistency of the full and reduced order models for evolve-filter-relax regularization of convection-dominated, marginally-resolved flows.

Numerical stabilization is often used to eliminate (alleviate) the spurious oscillations generally produced by full order models (FOMs) in under-resolved or marginally-resolved simulations of convection-dominated flows. In this article, we investigate the role of numerical stabilization in reduced order models (ROMs) of marginally-resolved, convection-dominated incompressible flows. Specifically, we investigate the FOM-ROM consistency, that is, whether the numerical stabilization is beneficial both at the FOM and the ROM level. As a numerical stabilization strategy, we focus on the evolve-filter-relax (EFR) regularization algorithm, which centers around spatial filtering. To investigate the FOM-ROM consistency, we consider two ROM strategies: (i) the EFR-noEFR, in which the EFR stabilization is used at the FOM level, but not at the ROM level; and (ii) the EFR-EFR, in which the EFR stabilization is used both at the FOM and at the ROM level. We compare the EFR-noEFR with the EFR-EFR in the numerical simulation of a 2D incompressible flow past a circular cylinder in the convection-dominated, marginally-resolved regime. We also perform model reduction with respect to both time and Reynolds number. Our numerical investigation shows that the EFR-EFR is more accurate than the EFR-noEFR, which suggests that FOM-ROM consistency is beneficial in convection-dominated, marginally-resolved flows.

A trait database and updated checklist for European subterranean spiders.

Species traits are an essential currency in ecology, evolution, biogeography, and conservation biology. However, trait databases are unavailable for most organisms, especially those living in difficult-to-access habitats such as caves and other subterranean ecosystems. We compiled an expert-curated trait database for subterranean spiders in Europe using both literature data (including grey literature published in many different languages) and direct morphological measurements whenever specimens were available to us. We started by updating the checklist of European subterranean spiders, now including 512 species across 20 families, of which at least 192 have been found uniquely in subterranean habitats. For each of these species, we compiled 64 traits. The trait database encompasses morphological measures, including several traits related to subterranean adaptation, and ecological traits referring to habitat preference, dispersal, and feeding strategies. By making these data freely available, we open up opportunities for exploring different research questions, from the quantification of functional dimensions of subterranean adaptation to the study of spatial patterns in functional diversity across European caves.

Taxonomic notes on leptonetid spiders from the Ryukyu Archipelago with the description of two new species and the first record of the genus Longileptoneta from Japan (Araneae: Leptonetidae).

The species belonging to the family Leptonetidae living in the Ryukyu Archipelago, Southwestern Japan, are herein discussed. Two species, Longileptoneta yamasakii sp. nov. and Masirana suzukii sp. nov., are described as new to science on the basis of both male and female. The new species were collected in caves in Yonaguni-jima Is. and Okinawa-honto Is., respectively the westernmost and largest islands of the Ryukyu arc. Longileptoneta yamasakii sp. nov. represents the first record of the genus Longileptoneta Seo, 2015 from Japan. The male and female of another leptonetid species previously known from the Ryukyus, Masirana longipalpis Komatsu, 1972, are redescribed and illustrated in detail. The internal genitalia of the female are shown and described for the first time.

An optimal control approach to determine resistance-type boundary conditions from in-vivo data for cardiovascular simulations.

The choice of appropriate boundary conditions is a fundamental step in computational fluid dynamics (CFD) simulations of the cardiovascular system. Boundary conditions, in fact, highly affect the computed pressure and flow rates, and consequently haemodynamic indicators such as wall shear stress (WSS), which are of clinical interest. Devising automated procedures for the selection of boundary conditions is vital to achieve repeatable simulations. However, the most common techniques do not automatically assimilate patient-specific data, relying instead on expensive and time-consuming manual tuning procedures. In this work, we propose a technique for the automated estimation of outlet boundary conditions based on optimal control. The values of resistive boundary conditions are set as control variables and optimized to match available patient-specific data. Experimental results on four aortic arches demonstrate that the proposed framework can assimilate 4D-Flow MRI data more accurately than two other common techniques based on Murray's law and Ohm's law.

Five new species of Macrothele Ausserer, 1871 from China (Araneae, Macrothelidae).

Five new species of the genus Macrothele Ausserer, 1871 are described from China: Macrothele emei Lin & Li, sp. nov. (♂♀, Sichuan), M. hanfeii Lin & Li, sp. nov. (♂♀, Hainan), M. hungae Lin & Li, sp. nov. (♂♀, Taiwan), M. limenghuai Lin & Li, sp. nov. (♂♀, Sichuan), and M. nanning Lin & Li, sp. nov. (♂♀, Guangxi). Types of the new species are deposited in the Institute of Zoology, Chinese Academy of Sciences in Beijing, China.

A survey on poorly known rainforest litter-dwelling spiders of Orchid Island (Lanyu, Taiwan) with the description of a new species (Araneae: Linyphiidae, Tetrablemmidae, and Theridiosomatidae).

Representatives of some poorly known spider species collected in the rainforest litter of the Orchid Island (Taiwan) are illustrated and discussed here. A new species, Brignoliella tao sp. nov. (Fam. Tetrablemmidae), endemic to Orchid Island, is described based on both sexes. The previously unknown female of Theridiosoma triumphale Zhao Li, 2012 (Fam. Theridiosomatidae), is described for the first time. Zoma taiwanica (Zhang, Zhu Tso 2006) comb. nov., from the same family, is illustrated and its transfer from the genus Theridiosoma O. Pickard-Cambridge, 1879 to Zoma Saaristo, 1996 is proposed on the basis of morphological characters. Habitus and genitalia of the endemic species Gongylidioides angustus Tu Li, 2006 (Fam. Linyphiidae) are also illustrated.

Reduced order methods for parametric optimal flow control in coronary bypass grafts, toward patient-specific data assimilation.

Coronary artery bypass grafts (CABG) surgery is an invasive procedure performed to circumvent partial or complete blood flow blockage in coronary artery disease. In this work, we apply a numerical optimal flow control model to patient-specific geometries of CABG, reconstructed from clinical images of real-life surgical cases, in parameterized settings. The aim of these applications is to match known physiological data with numerical hemodynamics corresponding to different scenarios, arisen by tuning some parameters. Such applications are an initial step toward matching patient-specific physiological data in patient-specific vascular geometries as best as possible. Two critical challenges that reportedly arise in such problems are: (a) lack of robust quantification of meaningful boundary conditions required to match known data as best as possible and (b) high computational cost. In this work, we utilize unknown control variables in the optimal flow control problems to take care of the first challenge. Moreover, to address the second challenge, we propose a time-efficient and reliable computational environment for such parameterized problems by projecting them onto a low-dimensional solution manifold through proper orthogonal decomposition-Galerkin.

Elevation to species level and redescription of Xysticus alpinus Kulczynski, 1887 stat. n. (Araneae, Thomisidae).

Xysticus alpinus Kulczynski, 1887 stat. n. from Central-Eastern Alps, previously considered a subspecies of X. lanio C. L. Koch, 1835, is analyzed in detail. Redescription of both sexes and illustrations of habitus and genitalia are provided. A careful comparison with the nominal species is carried out revealing clear differences in morphology and habitat preferences. In light of this evidence, its elevation to species level is proposed.

Diversification in tropics and subtropics following the mid-Miocene climate change: A case study of the spider genus Nesticella.

Caves may offer suitable refugia for troglophilic invertebrates during periods of unfavourable climatic conditions because of their stable microclimates. As a consequence, allopatric divergence from their epigean counterparts may occur, leading to formation of truly hypogean communities (the Climatic Relict Hypothesis). Unlike the well-studied effects of Pleistocene glaciations, we know little about how ancient climate changes drove the development of cave-dwelling organisms living at both middle and lower latitudes. We investigate the evolutionary history of the troglophilic spider genus Nesticella (Araneae, Nesticidae) in relation to Asian Neogene (23-2.6 Ma) climatic changes. Our analyses discern clear differences in the evolution of the two main clades of Nesticella, which occur in temperate/subtropical and tropical latitudes. Eastern Asian Nesticella gradually evolved greater sedentariness and a strict subterranean lifestyle starting from the middle Miocene Epoch (~15-14 Ma) in conjunction with the progressive deterioration of the climate and vegetational shifts. Caves appear to have acted as refugia because of their internally uniform temperature and humidity, which allowed these spiders to survive increasing external seasonality and habitat loss. In contrast, a uniform accumulation of lineages, long-lasting times for dispersals and the lack of a comparable habitat shifting characterized the tropical lineage. This difference in pattern likely owes to the mild effects of climate change at low latitudes and the consequent lack of strong climatic drivers in tropical environments. Thus, the mid-Miocene climatic shift appears to be the major evolutionary force shaping the ecological differences between Asian troglophilic invertebrates and the driver of the permanent hypogean communities in middle latitudes.